FastQCFastQC Report
Tue 4 Apr 2023
EGAF00004457638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004457638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53225889
Sequences flagged as poor quality0
Sequence length35-126
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA3151500.5920990817081515No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC1020200.19167364212554533No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG859510.16148344652355173No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)