FastQCFastQC Report
Fri 24 Mar 2023
EGAF00004671832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004671832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89931375
Sequences flagged as poor quality0
Sequence length101
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCATATGAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT4972060.5528726765269629No Hit
AGCCATATGAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA1216700.1352920490763096No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)