FastQCFastQC Report
Thu 23 Mar 2023
EGAF00004671836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004671836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98367377
Sequences flagged as poor quality0
Sequence length101
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGGCCTTCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT63929586.499063200597491No Hit
AGCTGGCCTTCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA21385432.1740368252372937No Hit
AGCTGGCCTTCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5535420.562729247116145No Hit
GCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCA3205750.32589564729371606No Hit
GAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGAT2153810.21895572146851086No Hit
TGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTG2055970.20900933446664943No Hit
ACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGC1972470.20052074784915733No Hit
AAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTT1970450.20031539521481803No Hit
AACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTG1898540.19300504475177782No Hit
AGCTGGCCTTCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC1799250.18291125115595996No Hit
GGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGG1798030.1827872262975966No Hit
CTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCT1609710.16364266783285275No Hit
CGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGA1606900.16335700401973716No Hit
GCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAA1381400.14043273716650997No Hit
GCCAGTTTGAATATTAGACATAATTTATCCTCAAGTAAGGGGCCGAAGCC1341390.1363653317705117No Hit
GCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGC1290610.13120305119043685No Hit
CGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTC1224250.12445691217322995No Hit
CAGTTTGAATATTAGACATAATTTATCCTCAAGTAAGGGGCCGAAGCCCC1211410.1231516013688156No Hit
AGGGGCTTCGGCCCCTTACTTGAGGATAAATTATGTCTAATATTCAAACT1206360.12263821978296728No Hit
CCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAG1129540.11482872009487455No Hit
GTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAG1078080.10959731090522014No Hit
GTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGT1076180.1094041574372772No Hit
GACCAATCTGACCAGCAAGGAAGCCAAGATGGGAAAGGTCATGCGGCATA1072140.10899345216859853No Hit
CAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCT1058230.10757936546381631No Hit
GCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCG1040580.10578507140634644No Hit
AGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATT1040340.10576067307355365No Hit
CCAGTTTGAATATTAGACATAATTTATCCTCAAGTAAGGGGCCGAAGCCC1036800.10540079766485996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)