FastQCFastQC Report
Wed 6 Sep 2023
EGAF00004671840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004671840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84630816
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCACCCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT42400795.010088760103648No Hit
TTCGCACCCGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA18511142.1872812853417365No Hit
TTCGCACCCGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC8011930.9466918055002567No Hit
GCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCA2605250.3078370412971086No Hit
GAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGAT1868550.22078837098770265No Hit
TGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTG1638420.19359614823990354No Hit
GCCAGTTTGAATATTAGACATAATTTATCCTCAAGTAAGGGGCCGAAGCC1554980.18373685537901466No Hit
CAGTTTGAATATTAGACATAATTTATCCTCAAGTAAGGGGCCGAAGCCCC1442010.17038828976906No Hit
GGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGG1403850.1658792938969181No Hit
AAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTT1396020.1649540989891909No Hit
ACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGC1311580.1549766458591159No Hit
CGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGA1291760.15263470932384723No Hit
AACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTG1266750.14967952099150267No Hit
CCAGTTTGAATATTAGACATAATTTATCCTCAAGTAAGGGGCCGAAGCCC1204830.14236303712349885No Hit
CTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCT1174960.13883358988290978No Hit
GCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAA1141270.13485277041402982No Hit
CGCCAGTTTGAATATTAGACATAATTTATCCTCAAGTAAGGGGCCGAAGC1136360.134272603492326No Hit
AGTTTGAATATTAGACATAATTTATCCTCAAGTAAGGGGCCGAAGCCCCT1082420.12789903857242732No Hit
GCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGC1066540.12602265349775194No Hit
GGCGCCAGTTTGAATATTAGACATAATTTATCCTCAAGTAAGGGGCCGAA1046270.12362754484134951No Hit
AGGGGCTTCGGCCCCTTACTTGAGGATAAATTATGTCTAATATTCAAACT978350.11560209935822904No Hit
CGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTC956260.1129919390119079No Hit
TTTGAATATTAGACATAATTTATCCTCAAGTAAGGGGCCGAAGCCCCTGC949870.11223689489180869No Hit
TTCGGCCCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCC937150.11073389626776138No Hit
GTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGT903020.10670108628043949No Hit
CCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAG878490.10380261487730427No Hit
GTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAG874930.10338196431900172No Hit
GCTCGGCGCCAGTTTGAATATTAGACATAATTTATCCTCAAGTAAGGGGC853090.10080134403997712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)