FastQCFastQC Report
Thu 23 Mar 2023
EGAF00004671841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004671841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84630816
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCACCCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT47722485.638901083028669No Hit
TTCGCACCCGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13449111.589150457913581No Hit
TTCGCACCCGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5564460.6574980914753321No Hit
GACCAATCTGACCAGCAAGGAAGCCAAGATGGGAAAGGTCATGCGGCATA1812170.21412649501098988No Hit
GCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCA1719320.20315531401705972No Hit
GCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAA1594570.18841482043609267No Hit
GCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGC1517060.17925621797147742No Hit
AAGACGACCAATCTGACCAGCAAGGAAGCCAAGATGGGAAAGGTCATGCG1147650.13560663293143718No Hit
CTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAG1080110.12762608835060743No Hit
GCCAGTTTGAATATTAGACATAATTTATCCTCAAGTAAGGGGCCGAAGCC1016190.12007328394423138No Hit
AGACGACCAATCTGACCAGCAAGGAAGCCAAGATGGGAAAGGTCATGCGG995210.11759428149670684No Hit
CGACCAATCTGACCAGCAAGGAAGCCAAGATGGGAAAGGTCATGCGGCAT993200.11735677935564276No Hit
AAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTT954700.11280760899197759No Hit
GAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGAT940540.11113445958030228No Hit
GTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGC928810.10974843962274923No Hit
AATCTGACCAGCAAGGAAGCCAAGATGGGAAAGGTCATGCGGCATACGCT924130.10919544956295825No Hit
CTGACCAGCAAGGAAGCCAAGATGGGAAAGGTCATGCGGCATACGCTCGG914220.10802448129532392No Hit
CTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAA890950.10527489183136318No Hit
CTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCT866050.10233270112862908No Hit
GTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTT851300.10058983715813398No Hit
GACCAGCAAGGAAGCCAAGATGGGAAAGGTCATGCGGCATACGCTCGGCG849250.10034760860630247No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)