FastQCFastQC Report
Wed 15 Mar 2023
EGAF00004671861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004671861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83565476
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCTCCCAGGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT15799491.890671932509545No Hit
TACCTCCCAGGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA5665320.6779498270314406No Hit
TACCTCCCAGGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC1470930.17602125547636444No Hit
GCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCA1243880.14885094413870148No Hit
AAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTT836590.10011191703138268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)