FastQCFastQC Report
Thu 16 Mar 2023
EGAF00004671872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004671872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97604364
Sequences flagged as poor quality0
Sequence length101
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGAGAGATCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT9687160.9924925078145072No Hit
CCCGAGAGATCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA3437070.3521430660620871No Hit
CCCGAGAGATCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC1020880.10459368394634486No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)