FastQCFastQC Report
Sun 5 Mar 2023
EGAF00004671873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004671873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97604364
Sequences flagged as poor quality0
Sequence length101
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGAGAGATCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT13735631.4072762156413416No Hit
CCCGAGAGATCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA4353340.4460189915278788No Hit
CCCGAGAGATCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC1273050.1304296189051547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)