FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004675389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004675389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51108107
Sequences flagged as poor quality0
Sequence length20-75
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGTAGTGGCGGGCGTTTGTAGTTTTAGTTATTTGGGAGGTTGAGGTAGGAGAATGGCGTGAATT787640.15411253639270966No Hit
CGGGAAGCGGAGTTTGTAGTGAGTCGAGATTGCGTTATTGTAGTTCGTAGTT571230.11176896064649783No Hit
CGGATTGCGGATTGTAGTGGCGTAATTTCGGTTTATTGTAAGTTTCGTTTTT519970.10173924070402372No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)