EGAF00004675402 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004675402
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	49150116
Sequences flagged as poor quality	0
Sequence length	75
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CAAACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACGAACGAATCACGAAATCAAAAAATC	81792	0.16641262860905556	No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACAAACGCCCGCCACTACGCCCGAGATC	76789	0.15623360888914278	No Hit
CAAACTACGAACTACAATAACGCAATCTCGACTCACTACAAACTCCGCTTCCCGAGATCGGAAGAGCGTCGTGTA	61885	0.12591018096478143	Illumina Single End PCR Primer 1 (100% over 21bp)
CAAAATAATCTCGATCTCCTAACCTCGTAATCCGCCCGCCTCGACCTCCCAAAATACTAAAATTACAAACGTAAA	56232	0.1144086821687257	No Hit
CAAAAAACGAAACTTACAATAAACCGAAATTACGCCACTACAATCCGCAATCCGAGATCGGAAGAGCGTCGTGTA	53416	0.10867929589423553	Illumina Single End PCR Primer 1 (100% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCCATTC	113625	62.46627	10
GTCGATT	1335	60.9862	30
ATTCACG	120490	60.802853	4
GTTAATT	7660	60.57464	53
CGCCATT	119260	60.512695	9
TTCACGC	120635	59.994854	5
GATAACT	100060	59.564617	8
GCCTATA	177650	59.12302	18
GCGATAA	78825	58.867065	6
ACGCCAT	122020	58.267643	8
GTAATAA	90140	58.205627	6
GTTCACT	4485	57.073532	22
CGCCTAT	192255	56.12929	17
GTTTCGC	605	55.88382	27
CATTCTC	214635	55.23345	12
CCCGAAT	112565	54.6877	31
CGTAATA	97075	54.62668	5
CAAATTC	411790	54.13613	1
CGCGATA	86405	54.134068	5
CCATTCT	221760	54.069466	11