FastQCFastQC Report
Mon 30 May 2022
EGAF00004675764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004675764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences345698959
Sequences flagged as poor quality0
Sequence length98
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTCCTTGAGGGAGGCAAGGATTCATGTCAGGGTGATTCTGGTGGCCCT5616720.16247431048816088No Hit
GAAGCCTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT5171640.14959952482819017No Hit
GTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCATGTCAGGGTGATT5039120.14576613174007272No Hit
GGCAAGGATTCATGTCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGG4866670.14077768744452598No Hit
GTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGC4211070.12181321031979155No Hit
GTCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGA4146800.11995407831123957No Hit
GTGGGCTTCCTTGAGGGAGGCAAGGATTCATGTCAGGGTGATTCTGGTGG4040290.11687307395102685No Hit
GCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACATG4033950.11668967739066867No Hit
CTCTGGAGGACCCCTCAACTGCCCCACAGAGGATGGTGGCTGGCAGGTCC3855600.11153056437176023No Hit
ATCCGCTCCGGCTGCAACGGTGACTCTGGAGGACCCCTCAACTGCCCCAC3750190.10848137960403866No Hit
GGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGTTG3685090.10659823826660698No Hit
CAAGGATTCATGTCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGAC3663990.10598788062882192No Hit
ATTCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCC3566180.10315854031831204No Hit
GCAAGGATTCATGTCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGA3545440.10255859636534226No Hit
GCTTCCTCGAGGGAGGCAAGGATTCCTGCCAGGGTGATTCTGGTGGCCCT3461370.10012671169194928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)