FastQCFastQC Report
Sat 21 Jan 2023
EGAF00004675774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004675774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences352082122
Sequences flagged as poor quality0
Sequence length98
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTCCTCGAGGGAGGCAAGGATTCCTGCCAGGGTGATTCTGGTGGCCCT7409440.21044635717118293No Hit
GGCAAGGATTCCTGCCAGGGTGATTCTGGTGGCCCTGTGGTCTCCAATGG7043740.20005957587360826No Hit
GCAAGGATTCCTGCCAGGGTGATTCTGGTGGCCCTGTGGTCTCCAATGGA6762210.1920634300198861No Hit
GTTCTGTGTGGGCTTCCTCGAGGGAGGCAAGGATTCCTGCCAGGGTGATT6540650.1857705799671362No Hit
ATTCTGGTGGCCCTGTGGTCTCCAATGGAGAGCTCCAAGGAATTGTCTCC6452670.18327173113322692No Hit
CTCCAATGGAGAGCTCCAAGGAATTGTCTCCTGGGGCTATGGCTGTGCCC5577400.15841190595868992No Hit
GCTTCCTTGAGGGAGGCAAGGATTCATGTCAGGGTGATTCTGGTGGCCCT5516800.15669071660503114No Hit
GTGGGCTTCCTCGAGGGAGGCAAGGATTCCTGCCAGGGTGATTCTGGTGG5358890.15220568342291463No Hit
GGCAAGGATTCATGTCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGG5242200.14889139983086105No Hit
GAAGCCTCCTACCCTGGAAAGATTACCAACAACATGTTCTGTGTGGGCTT5208560.14793594092232834No Hit
GTCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGA4850680.13777126689778357No Hit
GCCAGGGTGATTCTGGTGGCCCTGTGGTCTCCAATGGAGAGCTCCAAGGA4798230.13628155763046668No Hit
GGTGATTCTGGTGGCCCTGTGGTCTCCAATGGAGAGCTCCAAGGAATTGT4690630.13322545244146194No Hit
GGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGTTG4539470.12893213589527275No Hit
GTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCATGTCAGGGTGATT4520170.12838396832884347No Hit
ATTCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCC4506280.12798945809580187No Hit
GGGTGATTCTGGTGGCCCTGTGGTCTCCAATGGAGAGCTCCAAGGAATTG4394770.12482229927028218No Hit
CTCTGGAGGACCCCTCAACTGCCCCACAGAGGATGGTGGCTGGCAGGTCC4300370.12214110661375756No Hit
GTGAAGCCTCCTACCCTGGAAAGATTACCAACAACATGTTCTGTGTGGGC4271970.12133447661963365No Hit
CTCGAGGGAGGCAAGGATTCCTGCCAGGGTGATTCTGGTGGCCCTGTGGT4217610.11979051864496545No Hit
GCCAGGCTGAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAACAACATG4168530.1183965256832893No Hit
GGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGTTGT4127780.1172391252515798No Hit
GGTCTCCAATGGAGAGCTCCAAGGAATTGTCTCCTGGGGCTATGGCTGTG3950980.11221756951351253No Hit
GCAAGGATTCATGTCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGA3869570.10990532487190588No Hit
CAAGGATTCCTGCCAGGGTGATTCTGGTGGCCCTGTGGTCTCCAATGGAG3854450.10947587960742863No Hit
CAAGGATTCATGTCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGAC3833230.10887317930900224No Hit
GTGGGCTTCCTTGAGGGAGGCAAGGATTCATGTCAGGGTGATTCTGGTGG3801100.1079606081219881No Hit
GTCTCCTGGGGCTATGGCTGTGCCCAGAAGAACAGGCCTGGAGTCTACAC3785110.10750645271332465No Hit
GAAGCCTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT3743250.1063175255459293No Hit
GTTGTCTCCTGGGGTGATGGCTGTGCCCAGAAGAACAAGCCTGGAGTCTA3742960.10630928883120058No Hit
ATCCGCTCCGGCTGCAACGGTGACTCTGGAGGACCCCTCAACTGCCCCAC3737610.1061573356456878No Hit
GCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCCAG3735040.1060843413117125No Hit
GGATTCCTGCCAGGGTGATTCTGGTGGCCCTGTGGTCTCCAATGGAGAGC3721860.10570999682852399No Hit
GTGATTCTGGTGGCCCTGTGGTCTCCAATGGAGAGCTCCAAGGAATTGTC3545410.10069838195306037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)