FastQCFastQC Report
Tue 28 Jun 2022
EGAF00004675776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004675776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences326461228
Sequences flagged as poor quality0
Sequence length98
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGCCTCCTACCCTGGAAAGATTACCAACAACATGTTCTGTGTGGGCTT4603420.14100970054551162No Hit
GCCAGGCTGAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAACAACATG4448000.13624895143750426No Hit
GCTTCCTCGAGGGAGGCAAGGATTCCTGCCAGGGTGATTCTGGTGGCCCT3965640.12147353682073389No Hit
GTTCTGTGTGGGCTTCCTCGAGGGAGGCAAGGATTCCTGCCAGGGTGATT3937120.12059992618786572No Hit
GTGAAGCCTCCTACCCTGGAAAGATTACCAACAACATGTTCTGTGTGGGC3877730.11878072087629346No Hit
GAAGCCTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT3568880.10932017936292271No Hit
GGCAAGGATTCCTGCCAGGGTGATTCTGGTGGCCCTGTGGTCTCCAATGG3300150.10108857398526969No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)