FastQCFastQC Report
Sun 2 Apr 2023
EGAF00004677464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004677464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45032317
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA655370.14553326225696983No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG600850.13342640131086303No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG535830.11898788152517224No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)