FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004677469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004677469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28030831
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG895750.31955884575808685No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACG317100.11312543677352983No Hit
GAAAAAAATTCCAAAAGAGAACCACACACTACCATATCCAAACAACTTTTG316290.11283646924345554No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGG312950.11164492411944549No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)