FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004677495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004677495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4191733
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG119340.28470324803607483No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACATA117060.279263970295818No Hit
GAAAAAAATTCCAAAAGAGAACCACACACTACCATATCCAAACAACTTTTG70810.16892774420508178No Hit
CCCCGCCTCAGTTACACATCCAAACTCTACATTTACAAAACGAATTCAGGG67980.16217635999239455No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT67470.16095967944523185No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAGA67320.1606018322254781No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAA60330.14392615178495388No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACG50690.12092850379544691No Hit
GCAGGCGCAGACACGAGGCCCAGCTTCATCTTCAACGTTGTGGAAAGGGAC48290.11520294827938708No Hit
CTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACATAA46320.11050322145995464No Hit
CTGCTGAGTGTTCCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGA42850.10222502244298479No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)