FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004677496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004677496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4191733
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA95680.2282588132402517No Hit
GTTTAAACAGTTCAGTGATCTTTAGTGCATTGTTTATGTGTGGGTTTCTCT89590.2137302161182499No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG84610.20184968842242573No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG60440.14418857307943994No Hit
GCCGGCTTTCTGGCGTTGCTTGGCTGCAACTGCCGTCAGCCATTGATGATC49950.11916312417799511No Hit
GTGATCTTTAGTGCATTGTTTATGTGTGGGTTTCTCTCTCCCCTCCCTTGG45060.10749730481402321No Hit
CTGGCCTACTGGGCTGACATTAACTACAATTATGGGAAATGCAAAAGTTGT43540.103871119653852No Hit
CCGGCTTTCTGGCGTTGCTTGGCTGCAACTGCCGTCAGCCATTGATGATCG42190.10065049467606833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)