FastQCFastQC Report
Sat 1 Apr 2023
EGAF00004677592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004677592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29582646
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA528710.17872302565497353No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG484980.1639407103745892No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG344850.11657172248892138No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)