FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004677623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004677623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4814174
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATTTTTTCAGTGCTATTTTATCCAATTTTTGGCTTTATATTTTTCTAT137390.28538644427891474No Hit
CTCGGTTTTATTCTTATTGCTCAGGCTTGAGTGCACTGGCCTCTTCTCAGC101050.20990101313330178No Hit
CCCCTTCTAGCTTCAAGTATTCTTCTAAATTGGTTCTGGTCTACGTAAACA77870.16175152788411887No Hit
GTGGGTTTTGTTTTGTTTTTTGAATTTTTTATTTTGTTCTACTCGGTTTTA71890.14932987465762557No Hit
CTCCTGTTCAATCGTTTCTTTGGAAGGCAGTGGATTTTTCTCTTGCGTCTC58400.12130845291424862No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA57180.11877426948008112No Hit
CTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCCCC55560.11540920623143243No Hit
CTTAGCTTTTTGTTTCCTAGCTTGTCTTTTTTCTTCTGCTTCCTACTTTTC52640.10934378358571999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)