FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004677627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004677627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23542729
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG504710.21438041443708586No Hit
CTCGTCTTGCTGTGTTATGTCCGCCTCTTCACGGGCAGGTCAATTTCACTG429810.18256592088368345No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT351480.14929450192456448No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTTT320920.1363138487471015No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCGC304110.12917363998030984No Hit
GTGGGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTC298640.12685020500384642No Hit
CTGTGTTATGTCCGCCTCTTCACGGGCAGGTCAATTTCACTGGTTAAAAGT264570.1123786456531866No Hit
GTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGTT251940.10701393198723905No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG241840.102723860092855No Hit
GTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCT235890.10019654051150995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)