FastQCFastQC Report
Tue 26 Sep 2023
EGAF00004677644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004677644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62337495
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA984820.157981965749506No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG979420.1571157134241599No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGG630810.1011927091391786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)