FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004677676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004677676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32712266
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA703400.21502637573318828No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG657470.20098577090318354No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG626680.19157339940926135No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)