FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004677679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004677679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37858100
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG786680.20779701041520837No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGGC435440.11501897876544254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)