FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004677737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004677737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19435049
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT868940.4470994644778101No Hit
CTCCGGCTGCCCATTGCTCTCCCACTCCACGGCGATGTCGCTGGGATAGAA340590.17524524893145368No Hit
CTTGGCATTATGCACCTCCACGCCGTCCACGTACCAGTTGAACTTGACCTC279710.14392039865708597No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG276550.14229447016058464No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG260330.13394872325765683No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG252400.1298684659863734No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA236890.12188803846082405No Hit
CTCCACGCCGTCCACGTACCAGTTGAACTTGACCTCAGGGTCTTCGTGGCT203930.10492898680111379No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)