FastQCFastQC Report
Sun 14 May 2023
EGAF00004677803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004677803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61077111
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG1329500.21767565266798558No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT1304380.21356281897485294No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAGA686600.112415271246212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)