FastQCFastQC Report
Sun 2 Apr 2023
EGAF00004677875

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004677875
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43433529
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT760830.17517112183078654No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG501690.11550753796680902No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG472120.1086994335643323No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)