FastQCFastQC Report
Wed 27 Sep 2023
EGAF00004677941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004677941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73291571
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT3272020.44643878625551636No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA844990.11529156606562574No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG777480.10608041134771147No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)