FastQCFastQC Report
Mon 3 Apr 2023
EGAF00004678010

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004678010
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52571867
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA723870.13769151474114472No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG663070.1261263937991778No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG634870.12076230809912078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)