FastQCFastQC Report
Sat 13 May 2023
EGAF00004678101

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004678101
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55804148
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG688540.1233850931654758No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG584400.10472339798109631No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT570970.10231676684679426No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)