FastQCFastQC Report
Thu 12 Jan 2023
EGAF00004678109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004678109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37377602
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGTTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG874050.23384325190256988No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG450460.12051602454325454No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG430830.11526421625442959No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)