FastQCFastQC Report
Sun 2 Apr 2023
EGAF00004678151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004678151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47004912
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCA955480.2032723728958369No Hit
CTCAGGACAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACG919310.19557743241812686No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG856580.18223201864520033No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT842690.17927700832627874No Hit
CTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAG805310.17132464794317667No Hit
GCCGGCTTCACGCTCAGGACAAAACGCTACCTCTCTTCCTCGTGGTTTTCG755930.16081936287850085No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACG732330.15579861100473927No Hit
CTCAGACCGCGTTTTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT637140.13554753596815586No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)