FastQCFastQC Report
Sat 13 May 2023
EGAF00004678153

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004678153
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58903173
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGGACAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACG1482900.2517521424524957No Hit
CCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCA996110.16910973539574853No Hit
GCCGGCTTCACGCTCAGGACAAAACGCTACCTCTCTTCCTCGTGGTTTTCG976420.1657669613146307No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG930970.15805090839503672No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACG890950.15125670734240412No Hit
CTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAG719390.12213094191037893No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAGA607480.10313196540362944No Hit

[OK]Adapter Content

Adapter graph