FastQCFastQC Report
Sat 13 May 2023
EGAF00004678175

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004678175
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56790885
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT1270780.22376478197161392No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG910480.16032150229741973No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG611080.10760177447490032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)