FastQCFastQC Report
Sun 14 May 2023
EGAF00004678182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004678182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55751133
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG683720.12263786639098437No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA674030.12089978512185573No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG596860.10705791396203553No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)