FastQCFastQC Report
Tue 26 Sep 2023
EGAF00004678192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004678192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60970435
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG901900.14792415373123055No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA835690.1370647921406498No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG691120.11335329984114431No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)