FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004679215

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004679215
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84172788
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC59050.010.73334446
TATGCCG61100.010.20422348
TCGTATG61750.09.81779345
CTCGTAT70850.08.65399244
AATCTCG88250.07.18153541
GATCGGA95050.07.15675261
TCTCGTA96000.06.49434643
ACACGTC117100.06.060257413
CGTCTGA120000.05.941435316
ATGCCGT116900.05.775447449
ATCGGAA127050.05.62011342
ACGTCTG135950.05.396577415
ATCTCGT113900.05.352551542
Produced by FastQC (version 0.11.5)