FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004679235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004679235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19184472
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGCGA27200.081.798651
CGCCGAA30400.079.510171
TTTGCGC30550.079.119781
TTACGCG13200.078.524759
GTGCGAC33550.071.604351
ACGACCG29550.068.289461
CGGTACG31050.068.085231
TTACCCG38000.067.693071
GCGCTAG31900.066.966211
GTTCGCG37850.066.4528
ATAACGC33600.066.217951
GACGCGT32050.065.730261
GTTACGC30750.065.2948768
GCGCGTA34000.065.221511
CCGCTAT37200.063.3864251
TTCCGCG18900.063.2813387
AACCGCG36050.062.5378721
TCGTACG34500.062.39968
GGCGACT36150.061.34251
CGAACGC34950.061.333731
Produced by FastQC (version 0.11.5)