FastQCFastQC Report
Tue 13 Aug 2024
EGAF00004679365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004679365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4709005
Total Bases306 Mbp
Sequences flagged as poor quality0
Sequence length65
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATCGGAAGAGCACACGTCTGAACTCCAGTCACAACCGAGAATCTCGT102840.21839008452953437TruSeq Adapter, Index 1 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAACCGAGAATCTCGTAT51080.10847302137075668TruSeq Adapter, Index 1 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)