FastQCFastQC Report
Tue 13 Aug 2024
EGAF00004679375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004679375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1754440
Total Bases114 Mbp
Sequences flagged as poor quality0
Sequence length65
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGCAGAATCTCGTAT24340.13873372700120837TruSeq Adapter, Index 5 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)