EGAF00004679945 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004679945
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	40349582
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT	1524931	3.779298134984397	No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA	180462	0.4472462688708895	No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG	143867	0.3565514012016283	No Hit
CCACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC	97643	0.24199259362835532	No Hit
CAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCA	67888	0.1682495744317748	No Hit
CGATCATCAATGGCTGACGGCAGTTGCAGCCAAGCAACGCCAGAAAGCCGG	55252	0.1369332648848754	No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCGC	43388	0.10753023414220252	No Hit
TCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATC	42215	0.10462314082956298	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GAACGAT	213370	34.119576	45
TCAGACC	228770	32.41045	2
CTCAGAC	230755	32.367264	1
CAGACCG	230300	32.01955	3
AGACCGC	231440	31.8655	4
GACCGCG	233285	31.58208	5
ACCGCGT	234485	31.460777	6
AGAACGA	233810	31.157963	44
CCGCGTT	238455	30.94175	7
CGCGTTC	239865	30.774872	8
GCGTTCT	242840	30.41546	9
CGTTCTC	249330	29.767897	10
AAGAACG	249720	29.174582	43
GTTCTCT	258185	28.793362	11
ACTCCCC	255510	28.781765	25
CCTCTCA	257020	28.75679	19
AATACGG	255760	28.595984	32
CACTCCC	258850	28.532076	24
ATACGGA	256160	28.529016	33
CCCAATA	257650	28.512981	29