FastQCFastQC Report
Sat 18 Jun 2022
EGAF00004682401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004682401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66816465
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTG1082790.16205436788671773No Hit
GTAGTGGTTGTGCAGAGCCTCATGCATCACGGAGCATGAGAAGACGTTCCC1076740.1611489024449288No Hit
CTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTGGAGGG889310.13309743339459817No Hit
CCACGGTGAGCTTGCTGTAGAGGAAGAAGGAGCCGTCGGAGTCCAGCACGG772530.11561970541243091No Hit
CCACGCTGCTGAGGGAGTAGAGTCCTGAGGACTGTAGGACAGCCGGGAAGG753500.1127716050228039No Hit
CCTGCTGCCACCTGCTCTTGTCCACGGTGAGCTTGCTGTAGAGGAAGAAGG718040.10746452988795502No Hit
TTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTGGAGGGC701510.1049905887717945No Hit
GTCGGAGTCCAGCACGGGAGGCGTGGTCTTGTAGTTGTTCTCCGGCTGCCC671910.1005605429739511No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)