FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004682676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004682676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46806704
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCCGGC61300.08.9935615
TCTATAG193950.08.9003483
TTCTATA235850.07.8727322
CTATAGT222200.07.7272454
CGTAACG15850.07.522007542
ACGGACA72300.07.500568418
ATAGTGT243650.07.43166266
TATAGTG230650.07.42433075
CACCCGG77050.07.33069754
TTACTAG234400.07.26758914
TCACCCG76600.07.25720743
TACTAGA235300.07.22984115
AAGCCGG173100.07.082583445
TAGTGTG247950.07.06712687
TTTCTAT253450.06.94493061
CTTAGAT72800.06.8639651
CGGACAC77800.06.681576313
ACGCGCG14500.06.67286920
ACCGGTA25400.06.6423245
CGGCCCG78700.06.63170248
Produced by FastQC (version 0.11.5)