EGAF00004682748 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004682748
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24352036
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA	83678	0.3436180859785194	No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG	73047	0.29996259860982466	No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG	44647	0.18333990636347614	No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGG	43479	0.17854359282320378	No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGT	36918	0.1516012870546019	No Hit
TTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG	31791	0.13054760595787557	No Hit
ATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA	29218	0.1199817542976694	No Hit
TTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGT	27290	0.11206455180995956	No Hit
CAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG	26130	0.10730108973229179	No Hit
CCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA	25174	0.10337533995104146	No Hit
GGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAG	25096	0.10305503819064657	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGCTTAG	14730	15.567104	45
GTTGTCG	1990	14.472996	26
GGGAGGT	25130	13.354999	3
GAGCTTA	17675	13.012067	44
ACCCGGC	4065	12.954434	5
ATAGCTC	3925	12.828793	39
GGAGGTC	25450	12.740086	4
GGTCACT	25080	12.628511	7
AACTCTA	5205	12.611669	45
GTCACTC	25370	12.512243	8
ATATAGC	2575	12.497337	6
GGCATAG	18670	12.25038	35
TTTCAGG	14490	12.193636	1
GAGGTCA	27160	11.964665	5
ACTCTCC	26665	11.908525	11
ATAGGGG	19470	11.881627	38
AGGTCAC	27540	11.76677	6
CACTCTC	27310	11.609225	10
TGGCATA	19850	11.601666	34
TGGGAGG	21215	11.554805	2