FastQCFastQC Report
Sat 4 Jun 2022
EGAF00004682752

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004682752
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72363782
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG1973460.2727137727544423No Hit
CTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA1925830.26613175082529544No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA1765870.24402677018732932No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGT1437010.19858138426208843No Hit
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAAC1331940.18406168986579502No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG1196900.1654004208901077No Hit
TCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAA854800.11812539040593538No Hit
CACTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG732590.10123710781175035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)