FastQCFastQC Report
Sun 5 Jun 2022
EGAF00004682849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004682849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51749325
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT1565650.3025450090411807No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG830810.16054508923546346No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG768870.14857585098936074No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)