FastQCFastQC Report
Sun 12 May 2024
EGAF00004682866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004682866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70266728
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA985640.14027122481069562No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC957710.13629637059519836No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCG753340.10721148137138249No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)