FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004683342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004683342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46897024
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCTTAG109800.014.98717945
ATAGGGG116300.014.47362938
GGCATAG120100.014.02860635
CATAGGG122650.013.85042437
GTTGTCG28200.013.23958726
GAGCTTA129950.012.97520144
GCATAGG131650.012.9532236
GTCACTC180900.012.6514218
ATAGCTC76600.012.04599239
ACCCGGC83250.011.5998875
TCACCCG84500.011.5877433
TGGCATA148400.011.54906234
ACTCTCC209750.011.09433911
TAGCTCT85150.010.78482540
ATATAGC39700.010.7691186
AGGTCAC226650.010.6030936
GGTCACT216550.010.5784937
GGGAGGT248350.010.4956843
TGTCGTT34800.010.27563828
TAGGGGA223600.010.09524139
Produced by FastQC (version 0.11.5)