FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004683384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004683384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38012735
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGGGG82600.013.02137538
AGCTTAG87150.012.2867545
GGCATAG87750.011.87417735
CATAGGG94350.011.209637
GCATAGG99200.010.50307936
GTCACTC143450.010.4301388
GGTCACT140250.010.202977
TGGCATA105550.010.19152934
GAGCTTA106950.09.92826844
ACTCTCC151650.09.92574111
GGGAGGT170200.09.50490953
GCGTAGG38050.09.34436536
TAGGGGA160150.08.86518839
GGCGTAG41250.08.83813735
GGAGGTC178150.08.7273254
AAGCCGG155350.08.60146845
AGGTCAC177800.08.5923086
TCACTCT180650.08.58124359
GTTGTCG17600.08.56519726
CACTCTC170550.08.56178310
Produced by FastQC (version 0.11.5)