FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004683572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004683572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32133327
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTGTCG17800.09.10079526
TCTATAG120350.08.8277813
ATAGGGG67850.08.19138238
ATATAGC27600.07.9064366
TTCTATA146650.07.90483862
TTACTAG134050.07.821535614
GGCATAG67350.07.816590335
CTATAGT134450.07.784264
TATAGTG138650.07.7428475
TACTAGA136750.07.65041515
ATAGTGT148100.07.4887616
TTAACGG21650.07.3816953
TAGTGTG149700.07.30362847
GTTACTA145950.07.29210613
CGACCCG49000.07.1622036
TTTCTAT175300.07.10095021
AAGCCGG139100.06.93816945
TACGGTT23350.06.93720735
GGGAGGT134450.06.9142473
GGAGGTC114400.06.8860034
Produced by FastQC (version 0.11.5)