Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004683689 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39721077 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG | 196152 | 0.4938234680796797 | No Hit |
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAA | 74080 | 0.18650048184745846 | No Hit |
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACG | 58210 | 0.14654688240200536 | No Hit |
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG | 44502 | 0.11203623708390385 | No Hit |
CCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCC | 43023 | 0.10831277309021606 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTCGACG | 2850 | 0.0 | 25.324385 | 6 |
AGACCGC | 7830 | 0.0 | 22.886314 | 4 |
CGGTATA | 4465 | 0.0 | 22.334446 | 20 |
TCGACGA | 3370 | 0.0 | 21.483484 | 7 |
CAGACCG | 8675 | 0.0 | 20.83847 | 3 |
TTCGGCG | 8295 | 0.0 | 19.952234 | 44 |
CGACGAG | 3440 | 0.0 | 19.93528 | 8 |
GACCGCG | 9055 | 0.0 | 19.71566 | 5 |
TCGGCGC | 8455 | 0.0 | 19.628078 | 45 |
CCGCGTT | 19015 | 0.0 | 19.395824 | 1 |
ACCGCGT | 10180 | 0.0 | 17.581018 | 6 |
CGGCAGT | 59165 | 0.0 | 16.840881 | 40 |
CGCGTTC | 21855 | 0.0 | 16.758993 | 2 |
TTCGCGC | 1280 | 0.0 | 16.511883 | 7 |
TCAGACC | 11810 | 0.0 | 16.296768 | 2 |
CTACACG | 5320 | 0.0 | 16.273619 | 45 |
TGACGGC | 61390 | 0.0 | 16.233984 | 37 |
AGTTGCA | 62810 | 0.0 | 15.992534 | 44 |
GACGGCA | 62355 | 0.0 | 15.975236 | 38 |
ATGACGG | 6000 | 0.0 | 15.738769 | 16 |